Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella flexneri
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella flexneri; x__Shigella flexneri 2a
NCBI Strain Identifiers BS1046
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 97.79%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 5
23S Count 1
tRNA Count 20
Contig Count 347
N50 Contigs 34,916 bp
Longest Contig 137,248 bp
Scaffold Count 347
N50 Scaffolds 34,916 bp
Longest Scaffold 137,248 bp
Genome Size 4,352,377 bp
Protein Count 4,510
Coding Density 86.77%
GC Percentage 50.74%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM101740v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03420996
Country France
Date 2015-6-1
Genbank Assembly Accession GCA_001017405.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,819
Refseq Category na
Seq Rel Date 2015/06/01
Spanned Gaps 0
Species Taxid 623
SSU Count 6
Submitter U.S. Food and Drug Administration
Taxid 42897
Total Gap Length 0
Translation Table 11
tRNA Count (total) 87
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LAIF00000000.1