Streptococcus agalactiae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus agalactiae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus agalactiae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus agalactiae
NCBI Strain Identifiers ES-PW-004
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000186445.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.18%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 6
23S Count 1
tRNA Count 18
Contig Count 22
N50 Contigs 160,092 bp
Longest Contig 322,075 bp
Scaffold Count 22
N50 Scaffolds 160,092 bp
Longest Scaffold 322,075 bp
Genome Size 2,126,902 bp
Protein Count 2,114
Coding Density 89.13%
GC Percentage 35.33%
Ambiguous Bases 1
GTDB representative GCA_000186445.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM101659v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03435037
Country Spain
Date 2015-6-1
Genbank Assembly Accession GCA_001016595.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Vaginal-rectal
Latitude Longitude None
Molecule Count N/A
CDS Count 2,152
Refseq Category na
Seq Rel Date 2015/06/01
Spanned Gaps 0
Species Taxid 1311
SSU Count 6
Submitter Novartis Vaccines
Taxid 1311
Total Gap Length 0
Translation Table 11
tRNA Count (total) 42
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LCUW00000000.1