Streptococcus agalactiae
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus agalactiae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus agalactiae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus agalactiae
NCBI Strain Identifiers SH0396
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000186445.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.18%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 5
23S Count 2
tRNA Count 17
Contig Count 33
N50 Contigs 96,521 bp
Longest Contig 189,738 bp
Scaffold Count 33
N50 Scaffolds 96,521 bp
Longest Scaffold 189,738 bp
Genome Size 2,148,329 bp
Protein Count 2,176
Coding Density 89.18%
GC Percentage 35.36%
Ambiguous Bases N/A
GTDB representative GCA_000186445.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM101617v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03435106
Country Portugal
Date 2015-6-1
Genbank Assembly Accession GCA_001016175.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 2,196
Refseq Category na
Seq Rel Date 2015/06/01
Spanned Gaps 0
Species Taxid 1311
SSU Count 5
Submitter Novartis Vaccines
Taxid 1311
Total Gap Length 0
Translation Table 11
tRNA Count (total) 38
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDAA00000000.1