Streptococcus agalactiae
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus agalactiae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus agalactiae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus agalactiae
NCBI Strain Identifiers 418136
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000186445.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.18%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 17
Contig Count 38
N50 Contigs 101,664 bp
Longest Contig 266,800 bp
Scaffold Count 38
N50 Scaffolds 101,664 bp
Longest Scaffold 266,800 bp
Genome Size 2,170,636 bp
Protein Count 2,182
Coding Density 89.26%
GC Percentage 35.30%
Ambiguous Bases N/A
GTDB representative GCA_000186445.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM101603v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03435097
Country Portugal
Date 2015-6-1
Genbank Assembly Accession GCA_001016035.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Vaginal
Latitude Longitude None
Molecule Count N/A
CDS Count 2,206
Refseq Category na
Seq Rel Date 2015/06/01
Spanned Gaps 0
Species Taxid 1311
SSU Count 2
Submitter Novartis Vaccines
Taxid 1311
Total Gap Length 0
Translation Table 11
tRNA Count (total) 34
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LCZR00000000.1