Brachyspira hyodysenteriae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Brachyspirae; o__Brachyspirales; f__Brachyspiraceae; g__Brachyspira; s__Brachyspira hyodysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Brachyspirales; f__Brachyspiraceae; g__Brachyspira; s__Brachyspira hyodysenteriae
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Brachyspirales; f__Brachyspiraceae; g__Brachyspira; s__Brachyspira hyodysenteriae
NCBI Strain Identifiers ST195
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001676785.2)
Genome Characteristics
CheckM Completeness 99.2%
CheckM Contamination 0.8%
CheckM Strain Heterogeneity 33.33
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 142
N50 Contigs 79,690 bp
Longest Contig 220,447 bp
Scaffold Count 94
N50 Scaffolds 148,037 bp
Longest Scaffold 390,917 bp
Genome Size 3,082,158 bp
Protein Count 2,785
Coding Density 87.19%
GC Percentage 26.99%
Ambiguous Bases N/A
GTDB representative GCA_001676785.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM101323v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03285457
Country Germany
Date 2015-5-26
Genbank Assembly Accession GCA_001013235.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,741
Refseq Category na
Seq Rel Date 2015/05/26
Spanned Gaps 48
Species Taxid 159
SSU Count 1
Submitter Murdoch University
Taxid 159
Total Gap Length 480
Translation Table 11
tRNA Count (total) 33
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JXNO00000000.1