Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers CFSAN026788
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.23%
CheckM Strain Heterogeneity 33.33
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 212
N50 Contigs 104,173 bp
Longest Contig 362,821 bp
Scaffold Count 212
N50 Scaffolds 104,173 bp
Longest Scaffold 362,821 bp
Genome Size 5,209,585 bp
Protein Count 5,170
Coding Density 87.59%
GC Percentage 50.39%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CFSAN026788_02.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03455803
Country USA: KS
Date 2015-5-22
Genbank Assembly Accession GCA_001012195.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,584
Refseq Category na
Seq Rel Date 2015/05/22
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter FDA/CFSAN
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 93
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDDR00000000.1