Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers CFSAN026778
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.63%
CheckM Strain Heterogeneity 16.67
5S Count 3
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 181
N50 Contigs 88,395 bp
Longest Contig 245,571 bp
Scaffold Count 181
N50 Scaffolds 88,395 bp
Longest Scaffold 245,571 bp
Genome Size 5,096,868 bp
Protein Count 4,901
Coding Density 87.68%
GC Percentage 50.74%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CFSAN026778_02.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03455793
Country USA
Date 2015-5-22
Genbank Assembly Accession GCA_001012105.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,336
Refseq Category na
Seq Rel Date 2015/05/22
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter FDA/CFSAN
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 80
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDDV00000000.1