Escherichia flexneri
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers CFSAN026799
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.36%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 217
N50 Contigs 122,581 bp
Longest Contig 434,421 bp
Scaffold Count 216
N50 Scaffolds 122,581 bp
Longest Scaffold 434,421 bp
Genome Size 5,237,405 bp
Protein Count 5,164
Coding Density 87.95%
GC Percentage 50.40%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name CFSAN026799_01.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03455814
Country USA: KS
Date 2015-5-22
Genbank Assembly Accession GCA_001012015.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,558
Refseq Category na
Seq Rel Date 2015/05/22
Spanned Gaps 1
Species Taxid 562
SSU Count 1
Submitter FDA/CFSAN
Taxid 562
Total Gap Length 59
Translation Table 11
tRNA Count (total) 88
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDDK00000000.1