Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus
NCBI Strain Identifiers ATCC 17802
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 50.0
5S Count 4
16S Count 0
23S Count 0
tRNA Count 16
Contig Count 53
N50 Contigs 260,767 bp
Longest Contig 697,590 bp
Scaffold Count 51
N50 Scaffolds 366,570 bp
Longest Scaffold 697,590 bp
Genome Size 5,067,729 bp
Protein Count 4,551
Coding Density 86.88%
GC Percentage 45.25%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM101101v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03458146
Country Japan
Date 2015-4-24
Genbank Assembly Accession GCA_001011015.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,769
Refseq Category na
Seq Rel Date 2015/04/24
Spanned Gaps 2
Species Taxid 670
SSU Count 1
Submitter Huazhong Agricultural University
Taxid 670
Total Gap Length 23
Translation Table 11
tRNA Count (total) 101
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LATW00000000.1