Limosilactobacillus fermentum
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Limosilactobacillus; s__Limosilactobacillus fermentum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus fermentum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus fermentum
NCBI Strain Identifiers 39
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000159215.1)
Genome Characteristics
CheckM Completeness 92.9%
CheckM Contamination 0.82%
CheckM Strain Heterogeneity 50.0
5S Count 4
16S Count 5
23S Count 3
tRNA Count 19
Contig Count 55
N50 Contigs 85,869 bp
Longest Contig 260,777 bp
Scaffold Count 55
N50 Scaffolds 85,869 bp
Longest Scaffold 260,777 bp
Genome Size 1,829,655 bp
Protein Count 1,857
Coding Density 85.86%
GC Percentage 51.64%
Ambiguous Bases 308
GTDB representative GCA_000159215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM101018v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03452287
Country Russia
Date 2015-05-18
Genbank Assembly Accession GCA_001010185.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,852
Refseq Category na
Seq Rel Date 2015/05/18
Spanned Gaps 0
Species Taxid 1613
SSU Count 5
Submitter Federal State Scientific-Industrial Company MICROGEN
Taxid 1613
Total Gap Length 0
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LBDG00000000.1