Xanthomonas perforans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas perforans
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas perforans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas perforans
NCBI Strain Identifiers GEV872
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001976075.1)
Genome Characteristics
CheckM Completeness 99.64%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 80
N50 Contigs 143,709 bp
Longest Contig 573,498 bp
Scaffold Count 78
N50 Scaffolds 143,709 bp
Longest Scaffold 573,498 bp
Genome Size 5,145,241 bp
Protein Count 4,430
Coding Density 86.23%
GC Percentage 64.88%
Ambiguous Bases 8
GTDB representative GCA_001976075.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03379414
Country USA
Date 2015-5-18
Genbank Assembly Accession GCA_001009485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source tomato
Latitude Longitude None
Molecule Count N/A
CDS Count 4,603
Refseq Category na
Seq Rel Date 2015/05/18
Spanned Gaps 2
Species Taxid 442694
SSU Count 2
Submitter Universidade de Sao Paulo
Taxid 442694
Total Gap Length 26
Translation Table 11
tRNA Count (total) 54
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JZVL00000000.1