Xanthomonas perforans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas perforans
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas perforans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas perforans
NCBI Strain Identifiers Xp10-13
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001976075.1)
Genome Characteristics
CheckM Completeness 99.64%
CheckM Contamination 0.56%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 78
N50 Contigs 158,830 bp
Longest Contig 400,733 bp
Scaffold Count 78
N50 Scaffolds 158,830 bp
Longest Scaffold 400,733 bp
Genome Size 5,171,174 bp
Protein Count 4,428
Coding Density 86.21%
GC Percentage 64.78%
Ambiguous Bases N/A
GTDB representative GCA_001976075.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03378978
Country USA
Date 2015-5-18
Genbank Assembly Accession GCA_001009405.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source tomato
Latitude Longitude None
Molecule Count N/A
CDS Count 4,599
Refseq Category na
Seq Rel Date 2015/05/18
Spanned Gaps 0
Species Taxid 442694
SSU Count 1
Submitter Universidade de Sao Paulo
Taxid 442694
Total Gap Length 0
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JZVE00000000.1