Xanthomonas perforans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas perforans
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas euvesicatoria
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas euvesicatoria
NCBI Strain Identifiers 689
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001976075.1)
Genome Characteristics
CheckM Completeness 99.64%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 143
N50 Contigs 163,336 bp
Longest Contig 371,410 bp
Scaffold Count 139
N50 Scaffolds 187,297 bp
Longest Scaffold 588,835 bp
Genome Size 5,372,384 bp
Protein Count 4,665
Coding Density 85.89%
GC Percentage 64.50%
Ambiguous Bases N/A
GTDB representative GCA_001976075.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM100920v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03349341
Country USA
Date 2015-5-18
Genbank Assembly Accession GCA_001009205.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source pepper
Latitude Longitude None
Molecule Count N/A
CDS Count 4,811
Refseq Category na
Seq Rel Date 2015/05/18
Spanned Gaps 4
Species Taxid 456327
SSU Count 1
Submitter Universidade de Sao Paulo
Taxid 456327
Total Gap Length 239
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JZRS00000000.1