Xanthomonas perforans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas perforans
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas euvesicatoria
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas euvesicatoria
NCBI Strain Identifiers 678
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001976075.1)
Genome Characteristics
CheckM Completeness 99.64%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 202
N50 Contigs 132,312 bp
Longest Contig 371,370 bp
Scaffold Count 194
N50 Scaffolds 137,244 bp
Longest Scaffold 587,779 bp
Genome Size 5,418,336 bp
Protein Count 4,751
Coding Density 85.84%
GC Percentage 64.43%
Ambiguous Bases N/A
GTDB representative GCA_001976075.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03349331
Country USA
Date 2015-5-18
Genbank Assembly Accession GCA_001008915.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,891
Refseq Category na
Seq Rel Date 2015/05/18
Spanned Gaps 8
Species Taxid 456327
SSU Count 1
Submitter Universidade de Sao Paulo
Taxid 456327
Total Gap Length 512
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JZLY00000000.1