Vibrio parahaemolyticus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus
NCBI Strain Identifiers 10-4251
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.35%
CheckM Strain Heterogeneity 33.33
5S Count 11
16S Count 3
23S Count 1
tRNA Count 20
Contig Count 155
N50 Contigs 157,866 bp
Longest Contig 654,860 bp
Scaffold Count 155
N50 Scaffolds 157,866 bp
Longest Scaffold 654,860 bp
Genome Size 5,219,165 bp
Protein Count 4,766
Coding Density 86.85%
GC Percentage 45.12%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM100610v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03349609
Country Canada: British Columbia
Date 2015-5-12
Genbank Assembly Accession GCA_001006105.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 4,944
Refseq Category na
Seq Rel Date 2015/05/12
Spanned Gaps 0
Species Taxid 670
SSU Count 16
Submitter Health Canada
Taxid 670
Total Gap Length 0
Translation Table 11
tRNA Count (total) 112
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JYJS00000000.1