Sphingobacterium sp001006065
Isolate HQ 16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Sphingobacteriales; f__Sphingobacteriaceae; g__Sphingobacterium; s__Sphingobacterium sp001006065
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Sphingobacteriia; o__Sphingobacteriales; f__Sphingobacteriaceae; g__Sphingobacterium; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Sphingobacteriia; o__Sphingobacteriales; f__Sphingobacteriaceae; g__Sphingobacterium; s__Sphingobacterium sp. IITKGP-BTPF85
NCBI Strain Identifiers IITKGP-BTPF85
GTDB Type Material Designation not type material
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 92.84%
CheckM Contamination 2.88%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 344
N50 Contigs 30,842 bp
Longest Contig 87,254 bp
Scaffold Count 344
N50 Scaffolds 30,842 bp
Longest Scaffold 87,254 bp
Genome Size 5,610,811 bp
Protein Count 6,604
Coding Density 84.90%
GC Percentage 36.28%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name Sphingobacterium 2.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02179235
Country Svalbard: Ny-Alesund
Date 2015-5-11
Genbank Assembly Accession GCA_001006065.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source arctic permafrost soil
Latitude Longitude 78.916667 N 11.933333 E
Molecule Count N/A
CDS Count 5,233
Refseq Category na
Seq Rel Date 2015/05/11
Spanned Gaps 0
Species Taxid 1338009
SSU Count 1
Submitter Indian Institute of Technology Kharagpur
Taxid 1338009
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASZT00000000.2