Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers K88
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.07%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 89
N50 Contigs 124,198 bp
Longest Contig 547,008 bp
Scaffold Count 89
N50 Scaffolds 124,198 bp
Longest Scaffold 547,008 bp
Genome Size 5,209,646 bp
Protein Count 5,047
Coding Density 87.55%
GC Percentage 50.40%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM100568v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03465299
Country China: Guangdong
Date 2015-5-8
Genbank Assembly Accession GCA_001005685.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 23.08 N 113.14 E
Molecule Count N/A
CDS Count 5,490
Refseq Category na
Seq Rel Date 2015/05/08
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter Nanjing Agricultural University
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LBBN00000000.1