Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers CU_SPNE1_05
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 69
N50 Contigs 59,830 bp
Longest Contig 167,387 bp
Scaffold Count 68
N50 Scaffolds 62,218 bp
Longest Scaffold 167,387 bp
Genome Size 2,038,146 bp
Protein Count 2,048
Coding Density 86.13%
GC Percentage 39.74%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM100557v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03580776
Country Hong Kong
Date 2015-5-8
Genbank Assembly Accession GCA_001005575.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude 22.22 N 114.12 E
Molecule Count N/A
CDS Count 2,208
Refseq Category na
Seq Rel Date 2015/05/08
Spanned Gaps 1
Species Taxid 1313
SSU Count 1
Submitter The Chinese University of Hong Kong
Taxid 1313
Total Gap Length 24
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LCSI00000000.1