Leptospira santarosai
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Leptospirae; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira santarosai
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira santarosai
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira santarosai
NCBI Strain Identifiers U160
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000313175.2)
Genome Characteristics
CheckM Completeness 97.65%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 60
N50 Contigs 146,405 bp
Longest Contig 593,781 bp
Scaffold Count 2
N50 Scaffolds 3,768,600 bp
Longest Scaffold 3,768,600 bp
Genome Size 4,089,431 bp
Protein Count 3,757
Coding Density 83.71%
GC Percentage 41.81%
Ambiguous Bases 1,060
GTDB representative GCA_000313175.2
GTDB representative of species False
NCBI Metadata
Assembly Level Chromosome
Assembly Name ASM98810v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03470253
Country Brazil: Rio de Janeiro
Date 2018-3-26
Genbank Assembly Accession GCA_000988105.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude 22.54 S 43.12 W
Molecule Count 2
CDS Count 4,153
Refseq Category na
Seq Rel Date 2018/03/26
Spanned Gaps 58
Species Taxid 28183
SSU Count 1
Submitter Universidade Federal de Pelotas
Taxid 28183
Total Gap Length 4820
Translation Table 11
tRNA Count (total) 37
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None