Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Paratyphi A
NCBI Strain Identifiers
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 7
23S Count 7
tRNA Count 19
Contig Count 140
N50 Contigs 229,025 bp
Longest Contig 383,110 bp
Scaffold Count 2
N50 Scaffolds 4,610,532 bp
Longest Scaffold 4,610,532 bp
Genome Size 4,616,623 bp
Protein Count 4,401
Coding Density 86.94%
GC Percentage 52.16%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PA088
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2639214
Country None
Date 2015-4-26
Genbank Assembly Accession GCA_000985315.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,609
Refseq Category na
Seq Rel Date 2015/04/26
Spanned Gaps 138
Species Taxid 28901
SSU Count 7
Submitter UNIVERSITY OF WARWICK
Taxid 54388
Total Gap Length 3379
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CCTQ00000000.1