Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Paratyphi A
NCBI Strain Identifiers
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 7
23S Count 7
tRNA Count 19
Contig Count 164
N50 Contigs 226,390 bp
Longest Contig 345,873 bp
Scaffold Count 13
N50 Scaffolds 4,108,965 bp
Longest Scaffold 4,108,965 bp
Genome Size 4,585,868 bp
Protein Count 4,361
Coding Density 86.82%
GC Percentage 52.16%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PA107
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2637244
Country None
Date 2015-4-25
Genbank Assembly Accession GCA_000984875.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,561
Refseq Category na
Seq Rel Date 2015/04/25
Spanned Gaps 151
Species Taxid 28901
SSU Count 7
Submitter UNIVERSITY OF WARWICK
Taxid 54388
Total Gap Length 3596
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CCTK00000000.1