Salmonella enterica
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Paratyphi A
NCBI Strain Identifiers
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 1
tRNA Count 17
Contig Count 110
N50 Contigs 200,528 bp
Longest Contig 350,012 bp
Scaffold Count 20
N50 Scaffolds 2,313,173 bp
Longest Scaffold 2,313,173 bp
Genome Size 4,519,474 bp
Protein Count 4,352
Coding Density 87.27%
GC Percentage 52.17%
Ambiguous Bases 12
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PA044
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2639684
Country None
Date 2015-4-25
Genbank Assembly Accession GCA_000984535.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,531
Refseq Category na
Seq Rel Date 2015/04/25
Spanned Gaps 90
Species Taxid 28901
SSU Count 2
Submitter UNIVERSITY OF WARWICK
Taxid 54388
Total Gap Length 3839
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CCUL00000000.1