Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers ST-44
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.17%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 139
N50 Contigs 106,315 bp
Longest Contig 524,666 bp
Scaffold Count 139
N50 Scaffolds 106,315 bp
Longest Scaffold 524,666 bp
Genome Size 4,989,993 bp
Protein Count 4,786
Coding Density 87.77%
GC Percentage 50.76%
Ambiguous Bases 10
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM98106v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03473297
Country None
Date 2015-04-24
Genbank Assembly Accession GCA_000981065.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,219
Refseq Category na
Seq Rel Date 2015/04/24
Spanned Gaps 0
Species Taxid 562
SSU Count 2
Submitter Centers for Disease Control and Prevention
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 77
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LAXC00000000.1