Streptomyces malaysiense
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces malaysiense
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces malaysiense
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces malaysiense
NCBI Strain Identifiers MUSC 136
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.57%
CheckM Contamination 0.32%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 235
N50 Contigs 123,175 bp
Longest Contig 393,948 bp
Scaffold Count 235
N50 Scaffolds 123,175 bp
Longest Scaffold 393,948 bp
Genome Size 7,963,326 bp
Protein Count 7,121
Coding Density 87.44%
GC Percentage 72.20%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM98088v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03445833
Country Malaysia
Date 2016-11-04
Genbank Assembly Accession GCA_000980885.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source mangrove
Latitude Longitude None
Molecule Count N/A
CDS Count 7,176
Refseq Category na
Seq Rel Date 2016/11/04
Spanned Gaps 0
Species Taxid 1428626
SSU Count 1
Submitter University of Malaya
Taxid 1428626
Total Gap Length 0
Translation Table 11
tRNA Count (total) 67
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LBDA00000000.2