Methanosarcina mazei
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales; f__Methanosarcinaceae; g__Methanosarcina; s__Methanosarcina mazei
Filtered NCBI Taxonomy d__Archaea; p__Euryarchaeota; c__Methanomicrobia; o__Methanosarcinales; f__Methanosarcinaceae; g__Methanosarcina; s__Methanosarcina mazei
Unfiltered NCBI Taxonomy d__Archaea; p__Euryarchaeota; x__Stenosarchaea group; c__Methanomicrobia; o__Methanosarcinales; f__Methanosarcinaceae; g__Methanosarcina; s__Methanosarcina mazei
NCBI Strain Identifiers 1.H.T.2.1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000970205.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.65%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 193
N50 Contigs 37,490 bp
Longest Contig 130,619 bp
Scaffold Count 159
N50 Scaffolds 46,703 bp
Longest Scaffold 130,619 bp
Genome Size 4,077,567 bp
Protein Count 3,513
Coding Density 75.56%
GC Percentage 41.57%
Ambiguous Bases 4
GTDB representative GCA_000970205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name gtlEnvA5udCFS
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02708973
Country USA: Columbia River Estuary; north of Astoria; OR
Date 2015-4-23
Genbank Assembly Accession GCA_000980135.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sediment
Latitude Longitude 46.17467 N 123.8493 W
Molecule Count N/A
CDS Count 3,462
Refseq Category na
Seq Rel Date 2015/04/23
Spanned Gaps 34
Species Taxid 2209
SSU Count 1
Submitter University of Illinois at Urbana-Champaign
Taxid 2209
Total Gap Length 652
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JJQZ00000000.1