Methanosarcina mazei
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales; f__Methanosarcinaceae; g__Methanosarcina; s__Methanosarcina mazei
Filtered NCBI Taxonomy d__Archaea; p__Euryarchaeota; c__Methanomicrobia; o__Methanosarcinales; f__Methanosarcinaceae; g__Methanosarcina; s__Methanosarcina mazei
Unfiltered NCBI Taxonomy d__Archaea; p__Euryarchaeota; x__Stenosarchaea group; c__Methanomicrobia; o__Methanosarcinales; f__Methanosarcinaceae; g__Methanosarcina; s__Methanosarcina mazei
NCBI Strain Identifiers 1.H.A.2.6
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000970205.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.65%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 231
N50 Contigs 34,064 bp
Longest Contig 135,580 bp
Scaffold Count 204
N50 Scaffolds 36,997 bp
Longest Scaffold 135,580 bp
Genome Size 4,006,860 bp
Protein Count 3,466
Coding Density 75.48%
GC Percentage 41.60%
Ambiguous Bases 8
GTDB representative GCA_000970205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name gtlEnvA5udCFS
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02708979
Country USA: Columbia River Estuary; north of Astoria; OR
Date 2015-4-23
Genbank Assembly Accession GCA_000979995.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sediment
Latitude Longitude 46.17467 N 123.8493 W
Molecule Count N/A
CDS Count 3,421
Refseq Category na
Seq Rel Date 2015/04/23
Spanned Gaps 27
Species Taxid 2209
SSU Count 1
Submitter University of Illinois at Urbana-Champaign
Taxid 2209
Total Gap Length 554
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JJQN00000000.1