Methanosarcina mazei
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales; f__Methanosarcinaceae; g__Methanosarcina; s__Methanosarcina mazei
Filtered NCBI Taxonomy d__Archaea; p__Euryarchaeota; c__Methanomicrobia; o__Methanosarcinales; f__Methanosarcinaceae; g__Methanosarcina; s__Methanosarcina mazei
Unfiltered NCBI Taxonomy d__Archaea; p__Euryarchaeota; x__Stenosarchaea group; c__Methanomicrobia; o__Methanosarcinales; f__Methanosarcinaceae; g__Methanosarcina; s__Methanosarcina mazei
NCBI Strain Identifiers 1.H.A.2.1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000970205.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.65%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 320
N50 Contigs 23,833 bp
Longest Contig 116,492 bp
Scaffold Count 294
N50 Scaffolds 25,450 bp
Longest Scaffold 116,492 bp
Genome Size 3,998,326 bp
Protein Count 3,477
Coding Density 75.63%
GC Percentage 41.65%
Ambiguous Bases N/A
GTDB representative GCA_000970205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name gtlEnvA5udCFS
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02708978
Country USA: Columbia River Estuary; north of Astoria; OR
Date 2015-4-23
Genbank Assembly Accession GCA_000979935.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sediment
Latitude Longitude 46.17467 N 123.8493 W
Molecule Count N/A
CDS Count 3,424
Refseq Category na
Seq Rel Date 2015/04/23
Spanned Gaps 26
Species Taxid 2209
SSU Count 1
Submitter University of Illinois at Urbana-Champaign
Taxid 2209
Total Gap Length 551
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JJQK00000000.1