Methanosarcina sp000979455
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales; f__Methanosarcinaceae; g__Methanosarcina; s__Methanosarcina sp000979455
Filtered NCBI Taxonomy d__Archaea; p__Euryarchaeota; c__Methanomicrobia; o__Methanosarcinales; f__Methanosarcinaceae; g__Methanosarcina; s__
Unfiltered NCBI Taxonomy d__Archaea; p__Euryarchaeota; x__Stenosarchaea group; c__Methanomicrobia; o__Methanosarcinales; f__Methanosarcinaceae; g__Methanosarcina; s__Methanosarcina sp. 2.H.T.1A.6
NCBI Strain Identifiers 2.H.T.1A.6
GTDB Type Material Designation not type material
GTDB Representative of Species True (7 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.84%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 66
N50 Contigs 130,764 bp
Longest Contig 370,238 bp
Scaffold Count 54
N50 Scaffolds 144,439 bp
Longest Scaffold 370,238 bp
Genome Size 4,074,625 bp
Protein Count 3,446
Coding Density 76.04%
GC Percentage 42.78%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name gtlEnvA5udCFS
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02708991
Country USA: Columbia River Estuary; north of Astoria; OR
Date 2015-4-23
Genbank Assembly Accession GCA_000979455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sediment
Latitude Longitude 46.2855 N 124.0519 W
Molecule Count N/A
CDS Count 3,450
Refseq Category na
Seq Rel Date 2015/04/23
Spanned Gaps 12
Species Taxid 1483599
SSU Count 1
Submitter University of Illinois at Urbana-Champaign
Taxid 1483599
Total Gap Length 242
Translation Table 11
tRNA Count (total) 54
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JJOY00000000.1