Methanosarcina sp000979455
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales; f__Methanosarcinaceae; g__Methanosarcina; s__Methanosarcina sp000979455
Filtered NCBI Taxonomy d__Archaea; p__Euryarchaeota; c__Methanomicrobia; o__Methanosarcinales; f__Methanosarcinaceae; g__Methanosarcina; s__
Unfiltered NCBI Taxonomy d__Archaea; p__Euryarchaeota; x__Stenosarchaea group; c__Methanomicrobia; o__Methanosarcinales; f__Methanosarcinaceae; g__Methanosarcina; s__Methanosarcina sp. 2.H.T.1A.15
NCBI Strain Identifiers 2.H.T.1A.15
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000979455.1)
Genome Characteristics
CheckM Completeness 99.84%
CheckM Contamination 0.98%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 367
N50 Contigs 17,706 bp
Longest Contig 57,933 bp
Scaffold Count 352
N50 Scaffolds 18,699 bp
Longest Scaffold 73,881 bp
Genome Size 4,080,053 bp
Protein Count 3,639
Coding Density 75.93%
GC Percentage 42.80%
Ambiguous Bases N/A
GTDB representative GCA_000979455.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name gtlEnvA5udCFS
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02708988
Country USA: Columbia River Estuary; north of Astoria; OR
Date 2015-4-23
Genbank Assembly Accession GCA_000979415.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sediment
Latitude Longitude 46.2855 N 124.0519 W
Molecule Count N/A
CDS Count 3,587
Refseq Category na
Seq Rel Date 2015/04/23
Spanned Gaps 15
Species Taxid 1483596
SSU Count 1
Submitter University of Illinois at Urbana-Champaign
Taxid 1483596
Total Gap Length 315
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JJOW00000000.1