Methanosarcina sp000979455
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales; f__Methanosarcinaceae; g__Methanosarcina; s__Methanosarcina sp000979455
Filtered NCBI Taxonomy d__Archaea; p__Euryarchaeota; c__Methanomicrobia; o__Methanosarcinales; f__Methanosarcinaceae; g__Methanosarcina; s__
Unfiltered NCBI Taxonomy d__Archaea; p__Euryarchaeota; x__Stenosarchaea group; c__Methanomicrobia; o__Methanosarcinales; f__Methanosarcinaceae; g__Methanosarcina; s__Methanosarcina sp. 2.H.A.1B.4
NCBI Strain Identifiers 2.H.A.1B.4
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000979455.1)
Genome Characteristics
CheckM Completeness 99.84%
CheckM Contamination 0.65%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 104
N50 Contigs 62,668 bp
Longest Contig 222,866 bp
Scaffold Count 94
N50 Scaffolds 66,144 bp
Longest Scaffold 222,866 bp
Genome Size 3,907,151 bp
Protein Count 3,307
Coding Density 75.54%
GC Percentage 42.93%
Ambiguous Bases N/A
GTDB representative GCA_000979455.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name gtlEnvA5udCFS
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02708992
Country USA: Columbia River Estuary; north of Astoria; OR
Date 2015-4-23
Genbank Assembly Accession GCA_000979385.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sediment
Latitude Longitude 46.2855 N 124.0519 W
Molecule Count N/A
CDS Count 3,285
Refseq Category na
Seq Rel Date 2015/04/23
Spanned Gaps 10
Species Taxid 1483600
SSU Count 1
Submitter University of Illinois at Urbana-Champaign
Taxid 1483600
Total Gap Length 200
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JJOV00000000.1