Escherichia dysenteriae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7
NCBI Strain Identifiers Rafaela_II
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.47%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 1
23S Count 4
tRNA Count 20
Contig Count 328
N50 Contigs 147,588 bp
Longest Contig 375,042 bp
Scaffold Count 325
N50 Scaffolds 147,588 bp
Longest Scaffold 375,042 bp
Genome Size 5,427,553 bp
Protein Count 5,416
Coding Density 87.38%
GC Percentage 50.28%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM97884v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03470766
Country Argentina: Rafaela; Santa Fe
Date 2015-4-23
Genbank Assembly Accession GCA_000978845.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source rectal swab of live bovine cattle
Latitude Longitude 31.20 S 61.50 W
Molecule Count N/A
CDS Count 5,851
Refseq Category na
Seq Rel Date 2015/04/23
Spanned Gaps 3
Species Taxid 562
SSU Count 5
Submitter Instituto Nacional de Tecnologia Agropecuaria
Taxid 83334
Total Gap Length 1863
Translation Table 11
tRNA Count (total) 94
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LAYW00000000.1