Staphylococcus aureus
Isolate HQ 16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus LCT-SAM
NCBI Strain Identifiers LCT-SAM
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 98.38%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 115
N50 Contigs 56,696 bp
Longest Contig 155,003 bp
Scaffold Count 52
N50 Scaffolds 109,370 bp
Longest Scaffold 315,327 bp
Genome Size 2,796,689 bp
Protein Count 2,604
Coding Density 83.47%
GC Percentage 32.67%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM97872v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02585133
Country China: Beijing
Date 2015-4-23
Genbank Assembly Accession GCA_000978725.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum sample from patient
Latitude Longitude None
Molecule Count N/A
CDS Count 2,890
Refseq Category na
Seq Rel Date 2015/04/23
Spanned Gaps 63
Species Taxid 1280
SSU Count 1
Submitter China CDC
Taxid 1449973
Total Gap Length 9096
Translation Table 11
tRNA Count (total) 41
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JANO00000000.1