Salmonella enterica
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Heidelberg
NCBI Strain Identifiers ABB07-SB3031
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.47%
CheckM Contamination 0.62%
CheckM Strain Heterogeneity 33.33
5S Count 1
16S Count 3
23S Count 2
tRNA Count 18
Contig Count 293
N50 Contigs 31,289 bp
Longest Contig 133,078 bp
Scaffold Count 272
N50 Scaffolds 32,942 bp
Longest Scaffold 133,078 bp
Genome Size 4,755,315 bp
Protein Count 4,725
Coding Density 87.36%
GC Percentage 51.86%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ABB07-SB3031.id20_v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03293351
Country Canada: British Columbia; Fraser Valley
Date 2015-4-20
Genbank Assembly Accession GCA_000973785.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source fecal material
Latitude Longitude None
Molecule Count N/A
CDS Count 5,026
Refseq Category na
Seq Rel Date 2015/04/20
Spanned Gaps 21
Species Taxid 28901
SSU Count 3
Submitter McGill University and Genome Quebec Innovation Centre
Taxid 611
Total Gap Length 3469
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LAOS00000000.1