Demequina iriomotensis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Demequinaceae; g__Demequina; s__Demequina iriomotensis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Demequinaceae; g__Lysinimicrobium; s__Lysinimicrobium iriomotense
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Demequinaceae; g__Lysinimicrobium; s__Lysinimicrobium iriomotense
NCBI Strain Identifiers NBRC 109399
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 97.11%
CheckM Contamination 0.58%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 27
N50 Contigs 255,553 bp
Longest Contig 735,729 bp
Scaffold Count 27
N50 Scaffolds 255,553 bp
Longest Scaffold 735,729 bp
Genome Size 3,164,437 bp
Protein Count 2,926
Coding Density 92.19%
GC Percentage 71.91%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM97139v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00019188
Country None
Date 2015-4-1
Genbank Assembly Accession GCA_000971395.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,906
Refseq Category na
Seq Rel Date 2015/04/01
Spanned Gaps 0
Species Taxid 1536641
SSU Count 1
Submitter National Institute of Technology and Evaluation Biological Resource Center
Taxid 1536641
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master BBME00000000.1