Pseudomonas_A sp004010935
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_A; s__Pseudomonas_A sp004010935
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas sp. 10B238
NCBI Strain Identifiers 10B238
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_004010935.1)
Genome Characteristics
CheckM Completeness 99.8%
CheckM Contamination 1.09%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 72
N50 Contigs 312,794 bp
Longest Contig 547,635 bp
Scaffold Count 72
N50 Scaffolds 312,794 bp
Longest Scaffold 547,635 bp
Genome Size 4,931,757 bp
Protein Count 4,619
Coding Density 88.77%
GC Percentage 60.23%
Ambiguous Bases 9
GTDB representative GCA_004010935.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM97061v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03267211
Country China: the South China Sea
Date 2015-4-8
Genbank Assembly Accession GCA_000970615.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source deep-sea sediment
Latitude Longitude None
Molecule Count N/A
CDS Count 4,573
Refseq Category na
Seq Rel Date 2015/04/08
Spanned Gaps 9
Species Taxid 1586417
SSU Count 1
Submitter Chinese Academy of Sciences
Taxid 1586417
Total Gap Length 9
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JWTL00000000.1