Escherichia fergusonii
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia fergusonii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia fergusonii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia fergusonii
NCBI Strain Identifiers GTA-EF04
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026225.1)
Genome Characteristics
CheckM Completeness 99.9%
CheckM Contamination 0.55%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 39
N50 Contigs 336,937 bp
Longest Contig 606,137 bp
Scaffold Count 39
N50 Scaffolds 336,937 bp
Longest Scaffold 606,137 bp
Genome Size 4,644,753 bp
Protein Count 4,410
Coding Density 88.93%
GC Percentage 49.86%
Ambiguous Bases N/A
GTDB representative GCA_000026225.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM96888v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03400068
Country Canada: Ontario
Date 2016-1-29
Genbank Assembly Accession GCA_000968885.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Chopped Kale
Latitude Longitude None
Molecule Count N/A
CDS Count 4,601
Refseq Category na
Seq Rel Date 2016/01/29
Spanned Gaps 0
Species Taxid 564
SSU Count 1
Submitter Canadian Food Inspection Agency
Taxid 564
Total Gap Length 0
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JZWP00000000.2