Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli VR50
NCBI Strain Identifiers VR50
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 10
N50 Contigs 5,000,386 bp
Longest Contig 5,000,386 bp
Scaffold Count 10
N50 Scaffolds 5,000,386 bp
Longest Scaffold 5,000,386 bp
Genome Size 5,196,066 bp
Protein Count 4,922
Coding Density 87.42%
GC Percentage 50.80%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM96851v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03371467
Country None
Date 2015-04-02
Genbank Assembly Accession GCA_000968515.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urine
Latitude Longitude None
Molecule Count 10
CDS Count 5,331
Refseq Category na
Seq Rel Date 2015/04/02
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter The University of Queensland
Taxid 941323
Total Gap Length 0
Translation Table 11
tRNA Count (total) 93
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None