Pseudomonas_E sp002000165
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E sp002000165
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas fluorescens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas fluorescens group; s__Pseudomonas fluorescens
NCBI Strain Identifiers C1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002000165.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.19%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 58
N50 Contigs 245,990 bp
Longest Contig 656,819 bp
Scaffold Count 47
N50 Scaffolds 297,296 bp
Longest Scaffold 656,819 bp
Genome Size 6,296,329 bp
Protein Count 5,784
Coding Density 88.44%
GC Percentage 58.94%
Ambiguous Bases 29
GTDB representative GCA_002000165.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM96794v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03381134
Country Denmark:Hygum
Date 2015-4-1
Genbank Assembly Accession GCA_000967945.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source surface soil
Latitude Longitude 55.32 N 8.33 E
Molecule Count N/A
CDS Count 5,786
Refseq Category na
Seq Rel Date 2015/04/01
Spanned Gaps 11
Species Taxid 294
SSU Count 1
Submitter University of Copenhagen
Taxid 294
Total Gap Length 355
Translation Table 11
tRNA Count (total) 64
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LACE00000000.1