Bifidobacterium indicum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium indicum
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium coryneforme
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium coryneforme
NCBI Strain Identifiers Bma6
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000706765.1)
Genome Characteristics
CheckM Completeness 95.86%
CheckM Contamination 0.76%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 14
N50 Contigs 943,562 bp
Longest Contig 943,562 bp
Scaffold Count 6
N50 Scaffolds 1,590,186 bp
Longest Scaffold 1,590,186 bp
Genome Size 1,749,707 bp
Protein Count 1,390
Coding Density 88.59%
GC Percentage 60.55%
Ambiguous Bases N/A
GTDB representative GCA_000706765.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM96720v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03271958
Country Sweden: Jonstorp
Date 2015-3-31
Genbank Assembly Accession GCA_000967205.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gut
Latitude Longitude None
Molecule Count N/A
CDS Count 1,365
Refseq Category na
Seq Rel Date 2015/03/31
Spanned Gaps 8
Species Taxid 1687
SSU Count 1
Submitter Uppsala university
Taxid 1687
Total Gap Length 11642
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JXBX00000000.1