Staphylococcus epidermidis
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
NCBI Strain Identifiers NGS-ED-1110
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_006742205.1)
Genome Characteristics
CheckM Completeness 99.81%
CheckM Contamination 0.19%
CheckM Strain Heterogeneity 33.33
5S Count 5
16S Count 2
23S Count 1
tRNA Count 19
Contig Count 45
N50 Contigs 96,796 bp
Longest Contig 207,733 bp
Scaffold Count 45
N50 Scaffolds 96,796 bp
Longest Scaffold 207,733 bp
Genome Size 2,664,995 bp
Protein Count 2,552
Coding Density 84.15%
GC Percentage 31.95%
Ambiguous Bases N/A
GTDB representative GCA_006742205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM96681v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03396286
Country United Kingdom: Edinburgh; Royal Infirmary Edinburgh; Neonatal unit
Date 2015-3-31
Genbank Assembly Accession GCA_000966815.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude 55.9231 N 3.1366 W
Molecule Count N/A
CDS Count 2,636
Refseq Category na
Seq Rel Date 2015/03/31
Spanned Gaps 0
Species Taxid 1282
SSU Count 4
Submitter Cork Institute of Technology
Taxid 1282
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JZUM00000000.1