Mycobacterium lepromatosis
Isolate MQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium lepromatosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium lepromatosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium lepromatosis
NCBI Strain Identifiers Mx1-22A
GTDB Type Material Designation not type material
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 88.62%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 127
N50 Contigs 37,643 bp
Longest Contig 162,691 bp
Scaffold Count 126
N50 Scaffolds 37,643 bp
Longest Scaffold 162,691 bp
Genome Size 3,206,741 bp
Protein Count 4,001
Coding Density 68.57%
GC Percentage 57.89%
Ambiguous Bases 170
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM96635v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02900753
Country Mexico: Monterrey
Date 2015-3-30
Genbank Assembly Accession GCA_000966355.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source skin biopsy
Latitude Longitude 25.6890 N 100.3496 W
Molecule Count N/A
CDS Count 2,930
Refseq Category representative genome
Seq Rel Date 2015/03/30
Spanned Gaps 1
Species Taxid 480418
SSU Count 1
Submitter Ecole Polytechnique Federale de Lausanne
Taxid 480418
Total Gap Length 14
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRPY00000000.1