Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers St. Olav174
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 311
N50 Contigs 118,132 bp
Longest Contig 333,916 bp
Scaffold Count 306
N50 Scaffolds 118,132 bp
Longest Scaffold 333,916 bp
Genome Size 5,785,780 bp
Protein Count 5,915
Coding Density 87.52%
GC Percentage 50.60%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM96566v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03340674
Country Norway
Date 2015-3-27
Genbank Assembly Accession GCA_000965665.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude 63.43 N 10.40 E
Molecule Count N/A
CDS Count 6,407
Refseq Category na
Seq Rel Date 2015/03/27
Spanned Gaps 5
Species Taxid 562
SSU Count 4
Submitter Norwegian University of Science and Technology
Taxid 562
Total Gap Length 1412
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JZEA00000000.1