Xanthomonas albilineans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas albilineans
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas albilineans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas albilineans
NCBI Strain Identifiers FIJ080
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002939705.1)
Genome Characteristics
CheckM Completeness 99.96%
CheckM Contamination 0.34%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 103
N50 Contigs 188,915 bp
Longest Contig 387,969 bp
Scaffold Count 1
N50 Scaffolds 3,681,247 bp
Longest Scaffold 3,681,247 bp
Genome Size 3,681,247 bp
Protein Count 3,141
Coding Density 85.40%
GC Percentage 63.07%
Ambiguous Bases 14
GTDB representative GCA_002939705.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Xal-FIJ080-G1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03257616
Country Fiji
Date 2015-3-25
Genbank Assembly Accession GCA_000962995.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sugarcane
Latitude Longitude 18.8 S 178.26 E
Molecule Count N/A
CDS Count 3,061
Refseq Category na
Seq Rel Date 2015/03/25
Spanned Gaps 102
Species Taxid 29447
SSU Count 1
Submitter CIRAD
Taxid 29447
Total Gap Length 10200
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JZHX00000000.1