Clostridium_F sporogenes
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium_F; s__Clostridium_F sporogenes
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium sporogenes
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium sporogenes
NCBI Strain Identifiers 85-3852
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001020205.1)
Genome Characteristics
CheckM Completeness 95.63%
CheckM Contamination 0.69%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 300
N50 Contigs 30,089 bp
Longest Contig 134,794 bp
Scaffold Count 300
N50 Scaffolds 30,089 bp
Longest Scaffold 134,794 bp
Genome Size 3,997,146 bp
Protein Count 4,920
Coding Density 79.44%
GC Percentage 27.90%
Ambiguous Bases N/A
GTDB representative GCA_001020205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM96016v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03169462
Country None
Date 2015-03-23
Genbank Assembly Accession GCA_000960165.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,805
Refseq Category na
Seq Rel Date 2015/03/23
Spanned Gaps 0
Species Taxid 1509
SSU Count 1
Submitter Centers for Disease Control and Prevention
Taxid 1509
Total Gap Length 0
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JZJO00000000.1