Lacticaseibacillus paracasei
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lacticaseibacillus; s__Lacticaseibacillus paracasei
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus paracasei
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; x__Lactobacillus casei group; s__Lactobacillus paracasei; x__Lactobacillus paracasei NRIC 1981
NCBI Strain Identifiers NRIC1981
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000829035.1)
Genome Characteristics
CheckM Completeness 99.32%
CheckM Contamination 1.44%
CheckM Strain Heterogeneity 50.0
5S Count 5
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 527
N50 Contigs 17,209 bp
Longest Contig 55,838 bp
Scaffold Count 527
N50 Scaffolds 17,209 bp
Longest Scaffold 55,838 bp
Genome Size 3,189,772 bp
Protein Count 3,328
Coding Density 85.38%
GC Percentage 46.23%
Ambiguous Bases N/A
GTDB representative GCA_000829035.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM95848v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00000558
Country None
Date 2015-3-16
Genbank Assembly Accession GCA_000958485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,388
Refseq Category na
Seq Rel Date 2015/03/16
Spanned Gaps 0
Species Taxid 1597
SSU Count 2
Submitter Tokyo University of Agriculture
Taxid 1435040
Total Gap Length 0
Translation Table 11
tRNA Count (total) 61
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BAYO00000000.1