Clavibacter insidiosus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Microbacteriaceae; g__Clavibacter; s__Clavibacter insidiosus
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Clavibacter; s__Clavibacter michiganensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Clavibacter; s__Clavibacter michiganensis; sb__Clavibacter michiganensis subsp. insidiosus
NCBI Strain Identifiers R1-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002240565.1)
Genome Characteristics
CheckM Completeness 99.49%
CheckM Contamination 1.11%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 4
N50 Contigs 3,207,520 bp
Longest Contig 3,207,520 bp
Scaffold Count 4
N50 Scaffolds 3,207,520 bp
Longest Scaffold 3,207,520 bp
Genome Size 3,408,062 bp
Protein Count 3,238
Coding Density 89.02%
GC Percentage 72.60%
Ambiguous Bases N/A
GTDB representative GCA_002240565.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM95846v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03397809
Country USA: Ramsey County; Minnesota
Date 2015-03-20
Genbank Assembly Accession GCA_000958465.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 44.99 N 93.17 W
Molecule Count 4
CDS Count 3,219
Refseq Category na
Seq Rel Date 2015/03/20
Spanned Gaps 0
Species Taxid 28447
SSU Count 2
Submitter University of Minnesota, Twin Cities
Taxid 33014
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None