Pseudomonas_E sp000955815
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E sp000955815
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas sp. 5
NCBI Strain Identifiers 5
GTDB Type Material Designation not type material
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.73%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 126
N50 Contigs 209,672 bp
Longest Contig 363,293 bp
Scaffold Count 84
N50 Scaffolds 221,067 bp
Longest Scaffold 573,221 bp
Genome Size 5,605,119 bp
Protein Count 5,106
Coding Density 90.02%
GC Percentage 59.59%
Ambiguous Bases 263
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM95581v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03340300
Country USA
Date 2015-3-18
Genbank Assembly Accession GCA_000955815.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil
Latitude Longitude None
Molecule Count N/A
CDS Count 5,064
Refseq Category na
Seq Rel Date 2015/03/18
Spanned Gaps 42
Species Taxid 1619949
SSU Count 1
Submitter Cornell University
Taxid 1619949
Total Gap Length 2420
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JYOC00000000.1