Vibrio parahaemolyticus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus
NCBI Strain Identifiers 04-2549
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 50.0
5S Count 11
16S Count 3
23S Count 5
tRNA Count 20
Contig Count 138
N50 Contigs 373,928 bp
Longest Contig 557,727 bp
Scaffold Count 138
N50 Scaffolds 373,928 bp
Longest Scaffold 557,727 bp
Genome Size 5,129,237 bp
Protein Count 4,660
Coding Density 86.98%
GC Percentage 45.33%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM95179v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03349598
Country Canada: Saskatchewan
Date 2015-3-12
Genbank Assembly Accession GCA_000951795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,855
Refseq Category na
Seq Rel Date 2015/03/12
Spanned Gaps 0
Species Taxid 670
SSU Count 18
Submitter Health Canada
Taxid 670
Total Gap Length 0
Translation Table 11
tRNA Count (total) 117
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JYNG00000000.1