Photobacterium kishitanii
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium kishitanii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium kishitanii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium kishitanii
NCBI Strain Identifiers ATCC BAA-1194
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_003026355.1)
Genome Characteristics
CheckM Completeness 97.42%
CheckM Contamination 0.47%
CheckM Strain Heterogeneity 12.5
5S Count 4
16S Count 3
23S Count 5
tRNA Count 19
Contig Count 117
N50 Contigs 174,214 bp
Longest Contig 925,439 bp
Scaffold Count 117
N50 Scaffolds 174,214 bp
Longest Scaffold 925,439 bp
Genome Size 4,709,666 bp
Protein Count 4,281
Coding Density 85.15%
GC Percentage 39.02%
Ambiguous Bases N/A
GTDB representative GCA_003026355.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CFSAN029432_01.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03295480
Country None
Date 2015-3-10
Genbank Assembly Accession GCA_000950095.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source marine fish
Latitude Longitude None
Molecule Count N/A
CDS Count 4,165
Refseq Category representative genome
Seq Rel Date 2015/03/10
Spanned Gaps 0
Species Taxid 318456
SSU Count 3
Submitter FDA/CFSAN
Taxid 318456
Total Gap Length 0
Translation Table 11
tRNA Count (total) 84
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JZSP00000000.1