Photobacterium angustum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium angustum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium angustum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium angustum
NCBI Strain Identifiers GCSL-A10-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003026365.1)
Genome Characteristics
CheckM Completeness 99.66%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 70
N50 Contigs 196,065 bp
Longest Contig 957,267 bp
Scaffold Count 70
N50 Scaffolds 196,065 bp
Longest Scaffold 957,267 bp
Genome Size 4,769,116 bp
Protein Count 4,295
Coding Density 85.10%
GC Percentage 39.57%
Ambiguous Bases N/A
GTDB representative GCA_003026365.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CFSAN029427_01.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03295475
Country USA:Hi
Date 2015-3-10
Genbank Assembly Accession GCA_000950025.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source yellowfin tuna-anal vent
Latitude Longitude None
Molecule Count N/A
CDS Count 4,198
Refseq Category na
Seq Rel Date 2015/03/10
Spanned Gaps 0
Species Taxid 661
SSU Count 1
Submitter FDA/CFSAN
Taxid 661
Total Gap Length 0
Translation Table 11
tRNA Count (total) 92
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JZSU00000000.1